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Computer Analysis of Sequence Data Part II (Methods in Molecular Biology)
 
 
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Computer Analysis of Sequence Data Part II (Methods in Molecular Biology) [Paperback]

Annette M. Griffin (Author), Hugh G. Griffin (Author)

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Book Description

January 15, 1994 0896032760 978-0896032767 1st
These comprehensive, up-to-date handbooks are designed for those scientists engaged in the computer analysis of sequence data who want hands-on help in using the most important commercial software available, but simply do not have the time to become computer experts. The expert authors guide you through the programs with easy-to-follow, step-by-step instructions. The topics covered include translations of sequences, sequence alignment, phylogenetic trees, analysis of RNA secondary structure, database searching, submission of data to EMBL/GenBank/DDBJ/etc., maintaining sequence projects, and using patterns to analyze protein sequences.

Many chapters have been written by world-class authorities in the field, among them R. Staden, M. Gribskov, D. Higgins, W. Pearson, M. Zuker, and G. Barton. Each volume shares five essential chapters concerning the analysis of sequence data, the FASTA program, converting between sequence formats, obtaining software via INTERNET, and the submission of nucleotide sequence data.

Part I covers GCG, MicroGenie, PC/GENE, and FASTA programs.
Part II covers Staden and Staden Plus, DNA Strider, FASTA, and MacVector programs.

Editorial Reviews

Review

...a very useful book for all researchers involved in computer analysis of protein and/or nucleic acid sequences. It collects in one place basic procedures for use of these computer programs that will aid inexperienced users...[Also] will be valuable to experienced users.-Doody's Health Sciences Book Review Journal

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Inside This Book (learn more)
First Sentence:
DNA sequencing methodology was developed in the late 1970s (1,2) and has become one of the most widely used techniques in molecular biology. Read the first page
Key Phrases - Statistically Improbable Phrases (SIPs): (learn more)
fluorescent sequencing machines, positional base preferences method, positional base frequencies, results display mode, file name selection, enzyme file, energy dot plot, pattern file names, codon usage method, protein sequence files, segments using keyboard, initn score, prosite library, proportional algorithm, closed excision, graphical output files, contig editor, historical numbering, computed foldings, optimized score, stem score, pattern searcher, opt score, gel readings, nucleotide library
Key Phrases - Capitalized Phrases (CAPs): (learn more)
Nucleic Acids Res, Computer Analysis of Sequence Data, Griffin Copyright, Humana Press Inc, Mac Vector, Features Table, Rodger Staden, Vector Demo, Apple Macintosh, System Folder, New York, Staden Fig, National Biomedical Research Foundation, Academic Press, Genetics Computer Group, Write Ascii, Annotated Protein Database, Choose the Open, Gel Reader, General Control Menu, Macintosh System Software, Sequencing Project Maintenance Menu, Silicon Graphics, Choose Print, Listing the Sequence
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