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Crystallography Made Crystal Clear, Second Edition: A Guide for Users of Macromolecular Models (Complementary Science)
 
 
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Crystallography Made Crystal Clear, Second Edition: A Guide for Users of Macromolecular Models (Complementary Science) [Paperback]

Gale Rhodes (Author)
4.4 out of 5 stars  See all reviews (13 customer reviews)


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Paperback, December 13, 1999 --  
There is a newer edition of this item:
Crystallography Made Crystal Clear, Third Edition: A Guide for Users of Macromolecular Models (Complementary Science) Crystallography Made Crystal Clear, Third Edition: A Guide for Users of Macromolecular Models (Complementary Science) 4.4 out of 5 stars (13)
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Book Description

December 13, 1999 0125870728 978-0125870726 2
Macromolecules are the proteins and nucleic acids upon which life depends. Understanding the action of biological macromolecules (giant molecules) requires detailed knowledge of their structures. Most of the more than ten thousand known structures of protein and nucleic acids were obtained by x-ray crystallography, the standard mechanism for determining protein structure. Essentially, proteins are frozen into rigid crystals, which can be stacked up in a repeating pattern--like supermarket displays. The structure of each individual crystal can be determined by the way x-rays are bent when they pass through the composite crystal. Protein structure is essential when investigating protein interactions and planning drug development.
Crystallography Made Crystal Clear, Second Edition explains how scientists discover the structures of the macromolecules. Scientists do not see these molecules directly. Instead, they build models as a means of interpreting data from x-ray diffraction by crystals, or by irradiation by other forms of energy. Users of these models need to know how they are obtained in order to know what they are seeing when they study a model of a macromolecule. They also need to know how to judge whether conclusions they draw from the molecular models are really supported by the models. This book uses visual and geometric models to help readers understand the mathematics that forms the basis of x-ray crystallography.
The field of protein crystallography is growing every day and has been instrumental in discovering the molecular principles of biology and in discovering new drugs, such as the recent protease inhibitors for AIDS. The field includes the largest percentage of Nobel prizes than any other scientific discipline. Every major university and drug company has a protein crystallography laboratory and this book is an invaluable aid to those wishing to practice protein crystallography
or just learn more about how it is actually done.

Key Features
* Provides clear, understandable descriptions of principles of X-ray crystallography
* Leads reader through unintimidating and thorough explanations of the underlying mathematics
* Provides abundant illustrations, including diagrams, charts, photographs, and color stereo
* images
* Explains how to read crystallography papers in research journals
* Includes brief descriptions of other diffraction methods (neutron, electron, Laue) and the kinds
* of structural information they can provide
* Introduces other methods of macromolecular structure determination (NMR spectroscopy and
* homology modeling), and provides guidance in judging the quality of these models


Editorial Reviews

Review

"... I would recommend this book to anyone who is interested in macromolecules and how their structures are solved. The material is well presented and easy to read and would provide a good starting point for an undergraduate considering going into the field. It also provides sufficient information to be used as a text in a course on biophysical techniques." -- Biochemical Education

"Crystallography Made Crystal Clear bridges the gap between brief chapters and textbooks in biochemistry and proteins and complete treatments aimed at the professional crystallographer...All of the problems one encounters, from recognizing twinned crystals and visualizing the geometry of a precession camera, through identifying heavy atom binding sites from Patterson maps, to fitting electron density maps and refining the structure are dealt with patiently and creatively...the text has a light touch which both novices and noncrystallographers will appreciate...The thirteen color plates are excellent...Given the brevity of the text, it is remarkably complete...This book will be useful in many contexts - in elementary courses in crystallography, in biochemistry courses as an auxiliary text, in crystallographic laboratories as a handbook for novices, and in molecular biology laboratories as an introduction to the Protein Data Base and molecular graphics. It can be perused in an afternoon which will be well spent." -- Biophysical Journal

"Anyone interested in how protein structures are determined should find reading it an enjoyable and satisfying experience...Crystallography Made Crystal Clear is clearly written, accurate, and easy to read. The author Chose one of the most interesting topics in x-ray crystallography to examine, namely, the structure determination of proteins. Consequently the book can be recommended not only to the biochemists and biologists for whom it was written, but to all those who are curious." -- Applied Optics

"Crystallography is not an easy subject to teach or to learn, and Rhodes provides a comprehensive, yet less intimidating, treatment of the theoretical background, which should be understandable to a novice. The author assumes little mathematical knowledge and explains the physical significance of all equations. A most helpful feature is the use of a published structure report as an example of understanding and interpreting a macromolecular crystal structure determination, frequently the most difficult part for noncrystallographers. Highly recommended as a supplement to standard biochemistry works and as an introduction to the field for students learning crystallography." -- Choice

"This terse, well-written book lives up to its title in great measure, and, in my opinion is now the best reference for noncrystallographers who want to know more about X-ray diffraction and the data that result from it." -- American Journal of Physiology

"[A] successful introduction for those who try to understand and explore biological macromolecular structures....The text is loaded with many excellent didactic concepts and approaches." -- ACTA Cryst

Praise for the First Edition "Had [this book] appeared ten years ago, learning the tools of this trade would have been easier." -- Trends in Biotechnology

Book Description

Expanded and updated edition uses four-color art and concise language to explain the basis of X-ray crystallography --This text refers to an alternate Paperback edition.

Product Details

  • Paperback: 286 pages
  • Publisher: Academic Press; 2 edition (December 13, 1999)
  • Language: English
  • ISBN-10: 0125870728
  • ISBN-13: 978-0125870726
  • Product Dimensions: 9 x 6 x 0.6 inches
  • Shipping Weight: 12.2 ounces
  • Average Customer Review: 4.4 out of 5 stars  See all reviews (13 customer reviews)
  • Amazon Best Sellers Rank: #1,220,209 in Books (See Top 100 in Books)

More About the Author

Gale Rhodes provides learning tools in structural biology and bioinformatics at TheMolecularLevel.org.

 

Customer Reviews

13 Reviews
5 star:
 (9)
4 star:
 (1)
3 star:
 (2)
2 star:
 (1)
1 star:    (0)
 
 
 
 
 
Average Customer Review
4.4 out of 5 stars (13 customer reviews)
 
 
 
 
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18 of 20 people found the following review helpful:
4.0 out of 5 stars Updated for the e-century, June 25, 2000
By A Customer
This review is from: Crystallography Made Crystal Clear, Second Edition: A Guide for Users of Macromolecular Models (Complementary Science) (Paperback)
The second edition of Crystallography Made Crystal Clear contains many improvements over the first edition, especially regarding the introduction of new graphics technology available to everyone that can view this webpage on the internet. Rhodes especially explains how the PDB file works and how to view it to best suit the individual scientist's purpose.

It is important to note that the book is still far from "crystal clear"! The portion of the book dealing with the physics of x-ray diffraction is very mysterious--definately dig out the old college physics textbook and read about diffraction when you find yourself confused. Also, the mathematics presented in the middle chapters of the book are way beyond the level that biochemists must deal with on a regular basis. An understanding of multi-variable calculus is important for these chapters.

Overall, the book is a must-read for anyone interested in structural biology, with the exception of several chapters regarding the mathematics that can be skimmed over. And the webpage associated with the book is an excellent resource.

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9 of 10 people found the following review helpful:
5.0 out of 5 stars The best introduction to the subject, June 14, 2004
This review is from: Crystallography Made Crystal Clear, Second Edition: A Guide for Users of Macromolecular Models (Complementary Science) (Paperback)
This is the best introduction to crystallography I have ever come across. Which is quite an achievement because it's a rather complicated subject to study. In crystallography it's very common to find books which deal with either a totally descriptive approach or a totally mathematical approach. Rhodes' book bridges the gap between the two and gives the reader the right dose of jargon and explanation. He illustrates every point with plenty of figures as well as real life computer models of proteins. Before I came across this book, I was struggling and failing to understand Isomorphous Replacement, MAD, Solvent Flattening, Maps and Models, as well as the iterative refining of models. I think no other book comes even close to this book in explaining all these concepts in a simple format. This, I think is as clear as it can get without becoming oversimplified. A must have for all researchers and students whose work is connected to crystallography in any way; this would include crystallographers themselves, biochemists and molecular biologists and computational chemists.
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2 of 2 people found the following review helpful:
3.0 out of 5 stars Buy "Biomolecular Crystallography", July 22, 2010
Buy "Biomolecular Crystallography" instead. This book tries to condense too much information on too few pages. I didn't understand everything in "Biomolecular Crystallography", but the sections that I did understand, are very well written. It's more expensive, but it's a better book, for those that really want to understand crystallography beyond various tutorials on the internet and "Crystallography Made Crystal Clear".
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Inside This Book (learn more)
First Sentence:
Proteins perform many functions in living organisms. Read the first page
Key Phrases - Statistically Improbable Phrases (SIPs): (learn more)
other diffraction methods, crystallography paper, phasing model, new structure factors, adipocyte lipid binding protein, real unit cell, growing protein crystals, macromolecular models, measurable reflections, conformational angles, crystallographic models, rotation search, map fitting, spacing dhkl, reflection hkl, obtaining phases, reciprocal unit cell, goniometer head, precipitant concentration, net magnetization vector, molecular graphics programs, homology models, derivative crystals, twofold screw axis, precession camera
Key Phrases - Capitalized Phrases (CAPs): (learn more)
Protein Data Bank, Collecting Diffraction Data, Other Kinds of Macromolecular Models, User's Guide, Home Page, World Wide Web, American Chemical Society, Academic Press, Kevin Cowtan, Professor John, Professor Leonard
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