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Gene Mapping, Discovery, And Expression: Methods And Protocols (Methods in Molecular Biology) (Methods in Molecular Biology) [Hardcover]

Minou Bina (Editor)

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Book Description

April 21, 2006 Methods in Molecular Biology (Book 338)
A collection of cutting-edge computational tools and experimental techniques to study how genes are regulated, and to reconstruct the regulatory networks through which various cell-types are produced. On the computational side, web-based technologies to localize genes, to access and retrieve data from microarray databases, to conduct comparative genomics, and to discover the potential "codes" in genomic DNA that may control the expression of protein-coding genes. Detailed experimental techniques described include methods for studying chromatin structure and allele-specific gene expression, methods for high-throughput analysis to characterize the transcription factor binding elements, and methods for isolating and identifying proteins that interact with DNA. The protocols follow the successful Methods in Molecular Biology™ series format, each offering step-by-step instructions, an introduction outlining the principles behind the technique, lists of the necessary equipment and reagents, and tips on troubleshooting and avoiding pitfalls.

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Completion of the sequence of the human genome and the development of high-throughput technologies have opened a new era of research in biology and medicine. In Gene Mapping, Discovery, and Expression: Methods and Protocols, a panel of researchers from around the world and from a variety of disciplines offer a unique blend of computational tools and experimental techniques for gene mapping, comparative genomics, and studies of the control of gene expression. On the computational side, for beginners in the field, the book describes web-based technologies to localize and map genes, to access and retrieve data from microarray databases, to conduct comparative genomics, and to discover the potential "codes" in genomic DNA that may control the expression of protein-coding genes. Detailed experimental techniques described include methods for studying chromatin structure and allele-specific gene expression, methods for high-throughput analysis and characterization of transcription factor binding elements, and methods for isolation and identification of proteins that interact with DNA. The protocols in the book follow the successful Methods in Molecular Biology™ series format, offering step-by-step instructions, an introduction outlining the principles behind the technique, lists of the necessary equipment and reagents, and tips on troubleshooting and avoiding pitfalls. Cutting-edge and interdisciplinary, Gene Mapping, Discovery, and Expression: Methods and Protocols offers a collection of DNA-sequence-based technologies for gene discovery, retrieval of gene expression data, discovery of regulatory elements, and discovery of transcription factors that interact with DNA.

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Inside This Book (learn more)
Key Phrases - Statistically Improbable Phrases (SIPs): (learn more)
biotinylation tagging, comparative promoter analysis, relative allelic abundance, protein binding microarrays, fresh shortly before use, nucleosome ladders, bind buffer, tap spin, genome browser, fiber mapping, identifying segmental, recent segmental duplications, nucleosome arrangements, molecular combing, biotin ligase, mouse liver nuclei, blast databases, binding site motif, paralogous genes, streptavidin beads, ambiguity codes, antifade solution, blast output, query box, sequencing templates
Key Phrases - Capitalized Phrases (CAPs): (learn more)
Nucleic Acids Res, Genome Res, Fisher Scientific, Table Browser, Humana Press Inc, Display Data, Santa Cruz, Stanford Microarray Database, University of California, Basic Search, Amersham Biosciences, Binding Profiling, New England Biolabs, Advanced Search, Biotinylation Tagging of Transcription Factors, Detecting Nucleosome Ladders, Genome Biol, Text Browser, Gene Expression Omnibus, Methods Enzymol, Mining Data, Batch Entrez, Generic Feature Format, Gibco Invitrogen, Kodak Biomax
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