Genomes, Browsers and Databases: Data-Mining Tools for Integrated Genomic Databases (Kindle Edition)

by Peter Schattner (Author)

Editorial Reviews

Review

'The book would suit a bioinformatician wishing to gain an introduction into genome database querying and interaction.' Microbiology Today

'... provides a step-by-step account of how most commonly-used databases are compiled and updated, their applications and practical examples of how to use them. It is suitable for graduates and advanced undergraduates in bioinformatics or biology, or any researcher intent on exploiting the capabilities of databases as research tools more fully. ... the great strength of this book is its focus on basic concepts, with an emphasis on how to obtain information, enabling the reader to find new things out for themselves.' Journal of Biological Education

Product Description

The recent explosive growth of biological data has lead to a rapid increase in the number of molecular biology databases. Held in many different locations and often using varying interfaces and non-standard data formats, integrating and comparing data from these multiple databases can be difficult and time-consuming. This book provides an overview of the key tools currently available for large-scale comparisons of gene sequences and annotations, focusing on the databases and tools from the University of California, Santa Cruz (UCSC), Ensembl, and the National Centre for Biotechnology Information (NCBI). Written specifically for biology and bioinformatics students and researchers, it aims to give an appreciation for the methods by which the browsers and their databases are constructed, enabling readers to determine which tool is the most appropriate for their requirements. Each chapter contains a summary and exercises to aid understanding and promote effective use of these important tools.

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Product Details

• Format: Kindle Edition
• Print Length: 344 pages
• Simultaneous Device Usage: Up to 4 simultaneous devices, per publisher limits
• Publisher: Cambridge University Press; 1 edition (June 16, 2008)
• Sold by: Amazon Digital Services
• ASIN: B001GNC9B8
• Average Customer Review: 4.5 out of 5 stars  See all reviews (2 customer reviews)
• Amazon.com Sales Rank: #190,897 in Kindle Store (See Bestsellers in Kindle Store)

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Customer Reviews

Most Helpful Customer Reviews

2 of 3 people found the following review helpful:

4.0 out of 5 stars powerful analytic tools, July 8, 2008

By	W Boudville (Terra, Sol 3) - See all my reviews (TOP 10 REVIEWER)    (REAL NAME)

This review is from: Genomes, Browsers and Databases: Data-Mining Tools for Integrated Genomic Databases (Hardcover)

The sheer mass of genetic data being assembled by various biotech firms and research labs has led to the rise of genomics. This book describes various computational tools currently available, to help the researcher analyse the data.

One such tool addresses the need to visualise. The brain is best at analysing large amounts of data when presented in visual form. Ensembl and MapViewer are 2 of the so-called genome browsers that have been written. They let you troll thru the data and see it displayed in several ways. While these might be called browsers, they are a far step from the generic web browsers. Be warned that the APIs have very nontrivial learning curves.

Another part of the book looks at querying of databases. Another growing area, with sophisticated needs.

5.0 out of 5 stars Fundamental book for Genomics, October 16, 2008

By	T. Goldstein - See all my reviews (REAL NAME)

This review is from: Genomes, Browsers and Databases: Data-Mining Tools for Integrated Genomic Databases (Paperback)

The UCSC Genome Browser is a powerful tool that provides an open portal to the world's genomic information. But because its so powerful, it is often difficult to use. Here is an authoritative book that will get you on the air, not only with the reference data, but also with the means to compare it with your own data.

This is a terrific book.