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Phylogenetic supertrees: Combining information to reveal the Tree of Life (Computational Biology)
 
 
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Phylogenetic supertrees: Combining information to reveal the Tree of Life (Computational Biology) [Paperback]

Olaf R.P. Bininda-Emonds (Editor)

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Book Description

1402023294 978-1402023293 October 14, 2004 1
This is the first book on "phylogenetic supertrees", a recent, but controversial development for inferring evolutionary trees. Rather than analyze the combined primary character data directly, supertree construction proceeds by combining the tree topologies derived from those data. This difference in strategy has allowed for the exciting possibility of larger, more complete phylogenies than are otherwise currently possible, with the potential to revolutionize evolutionarily-based research. This book provides a comprehensive look at supertrees, ranging from the methods used to build supertrees to the significance of supertrees to bioinformatic and biological research. Reviews of many the major supertree methods are provided and four new techniques, including a Bayesian implementation of supertrees, are described for the first time. The far-reaching impact of supertrees on biological research is highlighted both in general terms and through specific examples from diverse clades such as flowering plants, even-toed ungulates, and primates. The book also critically examines the many outstanding challenges and problem areas for this relatively new field, showing the way for supertree construction in the age of genomics. Interdisciplinary contributions from the majority of the leading authorities on supertree construction in all areas of the bioinformatic community (biology, computer sciences, and mathematics) will ensure that this book is a valuable reference with wide appeal to anyone interested in phylogenetic inference.

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Editorial Reviews

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From the reviews: "It provides a very worthwhile introduction to a topic that is receiving a lot of attention among phylogeneticists in the new millennium: how to combine the information contained in multiple phylogenetic trees with partially overlapping sets of taxa. … this book achieves what it sets out to achieve, which is to provide an overview and evaluation of possible approaches to the construction of supertrees. … This book does a good job of explaining the arithmetic and the mathematics of supertrees … ." (David A. Morrison, Systematic Biology, Vol. 55 (3), 2006)

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Inside This Book (learn more)
First Sentence:
What are supertrees and what is all the fuss about? Read the first page
Key Phrases - Statistically Improbable Phrases (SIPs): (learn more)
supertree methods, supertree analysis, cladogenesis statistic, supertree construction, combining phylogenetic trees, global ratchet, supertree method for rooted trees, matrix representation with parsimony, source phylogenies, diversity partition, parsimony supertrees, taxon bipartition, nodal probabilities, quartet trees, consensus tree methods, gene tree parsimony, supertree algorithms, using complete phylogenies, phylogenetic supertrees, novel clades, supertree problem, combined matrix representations, combining gene trees, resulting supertree, supertree research
Key Phrases - Capitalized Phrases (CAPs): (learn more)
Kluwer Academic, Systematic Zoology, New York, Computational Biology, Journal of Classification, Olaf Bininda-Emonds, Journal of Molecular Evolution, Computer Science, Biological Reviews, American Mathematical Society, American Naturalist, Discrete Applied Mathematics, Rhode Island, Monte Carlo, Oxford University Press, Biological Journal of the Linnean Society, Biological Sciences, Cambridge University Press, Second International Workshop, Discrete Algorithms, New World, Academic Press, Lecture Notes, Phylogenetic Analysis Using Parsimony, Technical Report
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